Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20505

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2147
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26


Found at i:138 original size:6 final size:6

Alignment explanation


    Indices: 127--166  Score: 62
    Period size: 6  Copynumber: 6.7  Consensus size: 6

        117 ATCTGCTGCT

                    *       *                             
        127 CAGCAA CCGCAA CAACAA CAGCAA CAGCAA CAGCAA CAGC
          1 CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGCAA CAGC

        167 CGCCTTGGTC


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   6   30  1.00

ACGTcount: A:0.47, C:0.38, G:0.15, T:0.00


Consensus pattern (6 bp):   
CAGCAA

Done.