Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26606

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2988
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29


Found at i:553 original size:17 final size:18

Alignment explanation


    Indices: 527--561  Score: 54
    Period size: 17  Copynumber: 2.0  Consensus size: 18

        517 TACAGGAAGA

                              
        527 AAGAAGATGAT-GAGAAT
          1 AAGAAGATGATCGAGAAT

                 *            
        544 AAGAATATGATCGAGAAT
          1 AAGAAGATGATCGAGAAT

        562 CCTTTGGGGA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  17   10  0.62
  18    6  0.38

ACGTcount: A:0.51, C:0.03, G:0.26, T:0.20


Consensus pattern (18 bp):   
AAGAAGATGATCGAGAAT
Done.