Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34469

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 923

Length: 1539
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22


Found at i:256 original size:3 final size:3

Alignment explanation


    Indices: 250--275  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

        240 TCATCAACAA

                                              
        250 CAG CAG CAG CAG CAG CAG CAG CAG CA
          1 CAG CAG CAG CAG CAG CAG CAG CAG CA

        276 ATCGCTTACC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.35, C:0.35, G:0.31, T:0.00


Consensus pattern (3 bp):   
CAG

Done.