Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13182

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2859
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:191 original size:16 final size:17

Alignment explanation


    Indices: 160--193  Score: 52
    Period size: 16  Copynumber: 2.1  Consensus size: 17

        150 TCTCCACCCA

                  *          
        160 CCTCAACTCTCCTCCTC
          1 CCTCAAATCTCCTCCTC

                             
        177 CCTCAAATC-CCTCCTC
          1 CCTCAAATCTCCTCCTC

             
        193 C
          1 C

        194 TTTCCCTTTC


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  16    8  0.50
  17    8  0.50

ACGTcount: A:0.15, C:0.59, G:0.00, T:0.26


Consensus pattern (17 bp):   
CCTCAAATCTCCTCCTC
Done.