Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23558

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1698
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30


Found at i:158 original size:18 final size:18

Alignment explanation


    Indices: 135--174  Score: 71
    Period size: 18  Copynumber: 2.2  Consensus size: 18

        125 GGCAATCTTT

                              
        135 CAATATAACATGGAGTTC
          1 CAATATAACATGGAGTTC

                             *
        153 CAATATAACATGGAGTTT
          1 CAATATAACATGGAGTTC

                
        171 CAAT
          1 CAAT

        175 GTGAGTAAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30


Consensus pattern (18 bp):   
CAATATAACATGGAGTTC
Done.