Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15813

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 205

Length: 342
ACGTcount: A:0.20, C:0.36, G:0.16, T:0.27


Found at i:141 original size:24 final size:24

Alignment explanation


    Indices: 109--160  Score: 70
    Period size: 24  Copynumber: 2.2  Consensus size: 24

         99 TCAGTTACCT

                      *   *          
        109 CCAATGCCAATGATCCCAAC-TCTG
          1 CCAATGCCAACGATACCAACAT-TG

                                    
        133 CCAATGCCAACGATACCAACATTG
          1 CCAATGCCAACGATACCAACATTG

                
        157 CCAA
          1 CCAA

        161 CGACTCAACC


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  24   24  0.96
  25    1  0.04

ACGTcount: A:0.35, C:0.37, G:0.12, T:0.17


Consensus pattern (24 bp):   
CCAATGCCAACGATACCAACATTG
Done.