Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04873

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 289

Length: 483
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21


Found at i:377 original size:6 final size:6

Alignment explanation


    Indices: 366--395  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        356 AGAAAGATAC

                                      *       
        366 GAACAA GAACAA GAACAA GAACAG GAACAA
          1 GAACAA GAACAA GAACAA GAACAA GAACAA

        396 AAAGAATAAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.63, C:0.17, G:0.20, T:0.00


Consensus pattern (6 bp):   
GAACAA

Done.