Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18619

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 712

Length: 1188
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24


Found at i:932 original size:30 final size:30

Alignment explanation


    Indices: 892--979  Score: 124
    Period size: 30  Copynumber: 2.9  Consensus size: 30

        882 TATGGATCAA

                 *       *          *      
        892 AGGGACAAACC-ACGAAGAAGCACCGATACC
          1 AGGGAGAAACCAAGGAA-AAGCACTGATACC

                                          
        922 AGGGAGAAACCAAGGAAAAGCACTGATACC
          1 AGGGAGAAACCAAGGAAAAGCACTGATACC

                       *                
        952 AGGGAGAAACCGAGGAAAAGCACTGATA
          1 AGGGAGAAACCAAGGAAAAGCACTGATA

        980 GACCCCCAAG


Statistics
Matches: 53,  Mismatches: 4, Indels: 2
        0.90            0.07        0.03

Matches are distributed among these distances:
  30   49  0.92
  31    4  0.08

ACGTcount: A:0.45, C:0.22, G:0.27, T:0.06


Consensus pattern (30 bp):   
AGGGAGAAACCAAGGAAAAGCACTGATACC
Done.