Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14854

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 294
ACGTcount: A:0.25, C:0.14, G:0.31, T:0.30


Found at i:45 original size:18 final size:18

Alignment explanation


    Indices: 22--80  Score: 75
    Period size: 18  Copynumber: 3.3  Consensus size: 18

         12 CTTCAATGGG

                               
         22 TTTGGTGTTGGCAT-TGGT
          1 TTTGGTGTTGG-ATGTGGT

                       *      
         40 TTTGGTGTTGGGTGTGGT
          1 TTTGGTGTTGGATGTGGT

                 *        *   
         58 TTTGGAGTTGGATGGGGT
          1 TTTGGTGTTGGATGTGGT

                 
         76 TTTGG
          1 TTTGG

         81 AGGTATGCCT


Statistics
Matches: 36,  Mismatches: 4, Indels: 2
        0.86            0.10        0.05

Matches are distributed among these distances:
  17    1  0.03
  18   35  0.97

ACGTcount: A:0.05, C:0.02, G:0.46, T:0.47


Consensus pattern (18 bp):   
TTTGGTGTTGGATGTGGT

Done.