Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24054

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 802

Length: 1338
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.33


Found at i:114 original size:15 final size:15

Alignment explanation


    Indices: 94--127  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

         84 CCCTTTCACA

                  *    *   
         94 TTCCTCTTCCTTTCT
          1 TTCCTCCTCCTCTCT

                           
        109 TTCCTCCTCCTCTCT
          1 TTCCTCCTCCTCTCT

                
        124 TTCC
          1 TTCC

        128 GTTCCTTGGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53


Consensus pattern (15 bp):   
TTCCTCCTCCTCTCT
Done.