Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_06298

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1961
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.32


Found at i:40 original size:3 final size:3

Alignment explanation


    Indices: 25--56  Score: 55
    Period size: 3  Copynumber: 10.7  Consensus size: 3

         15 TAATGAGACA

                      *                               
         25 TCC TCC TCT TCC TCC TCC TCC TCC TCC TCC TC
          1 TCC TCC TCC TCC TCC TCC TCC TCC TCC TCC TC

         57 ATCAGCATCA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   27  1.00

ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38


Consensus pattern (3 bp):   
TCC

Done.