Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25875

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 505

Length: 842
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23


Found at i:694 original size:3 final size:3

Alignment explanation


    Indices: 686--716  Score: 53
    Period size: 3  Copynumber: 10.3  Consensus size: 3

        676 AGTGCCAGTC

                                             *       
        686 TCA TCA TCA TCA TCA TCA TCA TCA TGA TCA T
          1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T

        717 GGACTAGGTG


Statistics
Matches: 26,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
   3   26  1.00

ACGTcount: A:0.32, C:0.29, G:0.03, T:0.35


Consensus pattern (3 bp):   
TCA

Done.