Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18644

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2172
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26


Found at i:1069 original size:15 final size:15

Alignment explanation


    Indices: 1041--1073  Score: 50
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       1031 CTGAGAGGAT

                           
       1041 AGCAGCAAAAGAAGC
          1 AGCAGCAAAAGAAGC

                            
       1056 AGCAG-AAAAGGAAGC
          1 AGCAGCAAAA-GAAGC

               
       1071 AGC
          1 AGC

       1074 CAAAGCCTCA


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  14    4  0.24
  15   13  0.76

ACGTcount: A:0.52, C:0.18, G:0.30, T:0.00


Consensus pattern (15 bp):   
AGCAGCAAAAGAAGC
Done.