Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_41225

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1290
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.26


Found at i:748 original size:6 final size:6

Alignment explanation


    Indices: 714--747  Score: 59
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        704 AAAATAATAT

                                            *      
        714 TACTCC TACTCC TACTCC TACTCC TACTAC TACT
          1 TACTCC TACTCC TACTCC TACTCC TACTCC TACT

        748 AACATCAATT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.21, C:0.44, G:0.00, T:0.35


Consensus pattern (6 bp):   
TACTCC
Done.