Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27593

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2502
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23


Found at i:1251 original size:9 final size:9

Alignment explanation


    Indices: 1239--1272  Score: 50
    Period size: 9  Copynumber: 3.8  Consensus size: 9

       1229 ATGATGAGTC

                     
       1239 TGATGAAGA
          1 TGATGAAGA

                     
       1248 TGATGAAGA
          1 TGATGAAGA

             *       
       1257 TTATGAAGA
          1 TGATGAAGA

            *      
       1266 CGATGAA
          1 TGATGAA

       1273 TGTGATGACG


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   9   22  1.00

ACGTcount: A:0.44, C:0.03, G:0.29, T:0.24


Consensus pattern (9 bp):   
TGATGAAGA
Done.