Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24387

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.23


Found at i:119 original size:18 final size:18

Alignment explanation


    Indices: 96--133  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

         86 AGATCAGCAG

                              
         96 TGGTTTAACACCAGTCGA
          1 TGGTTTAACACCAGTCGA

                              
        114 TGGTTTAACACCAGTCGA
          1 TGGTTTAACACCAGTCGA

              
        132 TG
          1 TG

        134 TTCCAGCAGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29


Consensus pattern (18 bp):   
TGGTTTAACACCAGTCGA
Done.