Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_00526

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 372

Length: 621
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28


Found at i:560 original size:3 final size:3

Alignment explanation


    Indices: 552--583  Score: 64
    Period size: 3  Copynumber: 10.7  Consensus size: 3

        542 GGTATTATCC

                                                      
        552 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TG

        584 GGAATGATTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34


Consensus pattern (3 bp):   
TGA

Done.