Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_25263

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2258
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.33


Found at i:1785 original size:1 final size:1

Alignment explanation


    Indices: 1779--1808  Score: 60
    Period size: 1  Copynumber: 30.0  Consensus size: 1

       1769 GTTCCTTGTC

                                          
       1779 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       1809 CAGATTCTCA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   29  1.00

ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00


Consensus pattern (1 bp):   
T

Done.