Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03062

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2601
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28


Found at i:257 original size:27 final size:27

Alignment explanation


    Indices: 227--280  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

        217 TTTCTTTGGG

                                       
        227 ATGGTTGCTCTGATCCAAAGAAGATGC
          1 ATGGTTGCTCTGATCCAAAGAAGATGC

                                       
        254 ATGGTTGCTCTGATCCAAAGAAGATGC
          1 ATGGTTGCTCTGATCCAAAGAAGATGC

        281 TTGAAGTCCT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26


Consensus pattern (27 bp):   
ATGGTTGCTCTGATCCAAAGAAGATGC
Done.