Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20160

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29


Found at i:595 original size:12 final size:12

Alignment explanation


    Indices: 580--611  Score: 55
    Period size: 12  Copynumber: 2.7  Consensus size: 12

        570 ATCACCACCC

                        
        580 CCACCACCGCCG
          1 CCACCACCGCCG

                 *      
        592 CCACCGCCGCCG
          1 CCACCACCGCCG

                    
        604 CCACCACC
          1 CCACCACC

        612 ACCCATTGTT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.16, C:0.69, G:0.16, T:0.00


Consensus pattern (12 bp):   
CCACCACCGCCG
Done.