Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27654

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 529

Length: 882
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22


Found at i:397 original size:6 final size:6

Alignment explanation


    Indices: 388--416  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

        378 CCCTGGTCTA

                                             
        388 AGCCCT AGCCCT AGCCCT AGCCCT AGCCC
          1 AGCCCT AGCCCT AGCCCT AGCCCT AGCCC

        417 AACCCATACC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.17, C:0.52, G:0.17, T:0.14


Consensus pattern (6 bp):   
AGCCCT

Done.