Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02392

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3450
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24


Found at i:940 original size:18 final size:18

Alignment explanation


    Indices: 919--959  Score: 64
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        909 TGAGCGTGAT

                              
        919 CGTGACCATGATAGAGAC
          1 CGTGACCATGATAGAGAC

                 * *          
        937 CGTGATCGTGATAGAGAC
          1 CGTGACCATGATAGAGAC

                 
        955 CGTGA
          1 CGTGA

        960 GCGTTATAGG


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.29, C:0.20, G:0.32, T:0.20


Consensus pattern (18 bp):   
CGTGACCATGATAGAGAC

Found at i:968 original size:18 final size:18

Alignment explanation


    Indices: 927--968  Score: 66
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        917 ATCGTGACCA

                           *  
        927 TGATAGAGACCGTGATCG
          1 TGATAGAGACCGTGAGCG

                              
        945 TGATAGAGACCGTGAGCG
          1 TGATAGAGACCGTGAGCG

             *    
        963 TTATAG
          1 TGATAG

        969 GGAGAGGGAG


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24


Consensus pattern (18 bp):   
TGATAGAGACCGTGAGCG
Done.