Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15716

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2364
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:288 original size:12 final size:12

Alignment explanation


    Indices: 273--299  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        263 TATTAGGTCC

                        
        273 TCACCATCATCA
          1 TCACCATCATCA

                        
        285 TCACCATCATCA
          1 TCACCATCATCA

               
        297 TCA
          1 TCA

        300 TCCTTCTCTT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.33, C:0.41, G:0.00, T:0.26


Consensus pattern (12 bp):   
TCACCATCATCA
Done.