Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05264

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 590

Length: 984
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29


Found at i:697 original size:54 final size:54

Alignment explanation


    Indices: 611--720  Score: 139
    Period size: 54  Copynumber: 2.0  Consensus size: 54

        601 AATTTGGAGG

                      *         * *                     *         
        611 TGAACACTGACTTGCTACCATATCCTACAGAAGATTCTACAAGTGCTAAAGAGA
          1 TGAACACTGAATTGCTACCAAAGCCTACAGAAGATTCTACAAGTCCTAAAGAGA

                  *       *            *             *      *     
        665 TGAACATTGAATTGTTACCAAAGCCTAGAGAAGATTCTACAGGTCCTAGAGAGA
          1 TGAACACTGAATTGCTACCAAAGCCTACAGAAGATTCTACAAGTCCTAAAGAGA

              
        719 TG
          1 TG

        721 GAGGAGTGGA


Statistics
Matches: 47,  Mismatches: 9, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  54   47  1.00

ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25


Consensus pattern (54 bp):   
TGAACACTGAATTGCTACCAAAGCCTACAGAAGATTCTACAAGTCCTAAAGAGA
Done.