Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33070

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 480

Length: 801
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31


Found at i:521 original size:30 final size:30

Alignment explanation


    Indices: 456--541  Score: 84
    Period size: 30  Copynumber: 2.9  Consensus size: 30

        446 ATAGAATCAA

                  *     *                * 
        456 ATCACCGGCACCATCACCAC-TAGAAGTGTC
          1 ATCACCAGCACCGTCACC-CGTAGAAGTGCC

            *                             
        486 GTCACCAGCACCGTCACCCGTAGAAGTGCC
          1 ATCACCAGCACCGTCACCCGTAGAAGTGCC

                  *    *   *  *       
        516 ATCACCTGCACTGTCGCCTGTAGAAG
          1 ATCACCAGCACCGTCACCCGTAGAAG

        542 CTCCACATCC


Statistics
Matches: 46,  Mismatches: 9, Indels: 2
        0.81            0.16        0.04

Matches are distributed among these distances:
  29    1  0.02
  30   45  0.98

ACGTcount: A:0.26, C:0.36, G:0.21, T:0.17


Consensus pattern (30 bp):   
ATCACCAGCACCGTCACCCGTAGAAGTGCC
Done.