Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35074

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 840

Length: 1401
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27


Found at i:1319 original size:27 final size:27

Alignment explanation


    Indices: 1289--1346  Score: 98
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1279 TTGTTGCACC

                     *       *         
       1289 AGAATGAGAGGCTGAGATTGGAGTTAG
          1 AGAATGAGAAGCTGAGACTGGAGTTAG

                                       
       1316 AGAATGAGAAGCTGAGACTGGAGTTAG
          1 AGAATGAGAAGCTGAGACTGGAGTTAG

                
       1343 AGAA
          1 AGAA

       1347 GCTCAAAATG


Statistics
Matches: 29,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.38, C:0.05, G:0.38, T:0.19


Consensus pattern (27 bp):   
AGAATGAGAAGCTGAGACTGGAGTTAG
Done.