Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02310

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23


Found at i:237 original size:18 final size:18

Alignment explanation


    Indices: 214--256  Score: 77
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        204 GGAGGAAGAA

                              
        214 GAAGAAGAAGAACCAGAG
          1 GAAGAAGAAGAACCAGAG

                    *         
        232 GAAGAAGAGGAACCAGAG
          1 GAAGAAGAAGAACCAGAG

                   
        250 GAAGAAG
          1 GAAGAAG

        257 GAGTTCAAGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  18   24  1.00

ACGTcount: A:0.53, C:0.09, G:0.37, T:0.00


Consensus pattern (18 bp):   
GAAGAAGAAGAACCAGAG
Done.