Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26306

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 936

Length: 1560
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26


Found at i:785 original size:6 final size:6

Alignment explanation


    Indices: 774--801  Score: 56
    Period size: 6  Copynumber: 4.7  Consensus size: 6

        764 GCAAATACTG

                                            
        774 TGGCAA TGGCAA TGGCAA TGGCAA TGGC
          1 TGGCAA TGGCAA TGGCAA TGGCAA TGGC

        802 CTTTTGATGC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.29, C:0.18, G:0.36, T:0.18


Consensus pattern (6 bp):   
TGGCAA

Done.