Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19155

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 277

Length: 462
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26


Found at i:228 original size:15 final size:15

Alignment explanation


    Indices: 210--238  Score: 58
    Period size: 15  Copynumber: 1.9  Consensus size: 15

        200 CTCCTCCTCC

                           
        210 TCCTCCTCCAGGATA
          1 TCCTCCTCCAGGATA

                          
        225 TCCTCCTCCAGGAT
          1 TCCTCCTCCAGGAT

        239 CAATAGGACA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.17, C:0.41, G:0.14, T:0.28


Consensus pattern (15 bp):   
TCCTCCTCCAGGATA
Done.