Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35367

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1938
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.23


Found at i:1725 original size:21 final size:20

Alignment explanation


    Indices: 1701--1746  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 20

       1691 AGGCTAAAAA

                                 
       1701 AATGAGAAGAGAAGTAGCTGC
          1 AATGAGAA-AGAAGTAGCTGC

                        *  *     
       1722 AATGGAGAAAGAGGTTGCTGC
          1 AAT-GAGAAAGAAGTAGCTGC

                
       1743 AATG
          1 AATG

       1747 CGCGTGGAGA


Statistics
Matches: 22,  Mismatches: 2, Indels: 3
        0.81            0.07        0.11

Matches are distributed among these distances:
  20    1  0.05
  21   16  0.73
  22    5  0.23

ACGTcount: A:0.39, C:0.09, G:0.35, T:0.17


Consensus pattern (20 bp):   
AATGAGAAAGAAGTAGCTGC
Done.