Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19519

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3501
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29


Found at i:2788 original size:66 final size:66

Alignment explanation


    Indices: 2682--2807  Score: 207
    Period size: 66  Copynumber: 1.9  Consensus size: 66

       2672 CAACAGAAGC

                                             *                               
       2682 TTTCCCTTGCCTCAAGAAACTATCCATCATGAATTGTCCACTCTTAAAAACAATGCCATCCTTTG
          1 TTTCCCTTGCCTCAAGAAACTATCCATCATGAAATGTCCACTCTTAAAAACAATGCCATCCTTTG

             
       2747 G
         66 G

                             *      **                      *           
       2748 TTTCCCTTGCCTCAAGAGACTATCGGTCATGAAATGTCCACTCTTAAAGACAATGCCATC
          1 TTTCCCTTGCCTCAAGAAACTATCCATCATGAAATGTCCACTCTTAAAAACAATGCCATC

       2808 GTTTCCAACT


Statistics
Matches: 55,  Mismatches: 5, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  66   55  1.00

ACGTcount: A:0.29, C:0.29, G:0.13, T:0.30


Consensus pattern (66 bp):   
TTTCCCTTGCCTCAAGAAACTATCCATCATGAAATGTCCACTCTTAAAAACAATGCCATCCTTTG
G
Done.