Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_21831

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31


Found at i:250 original size:21 final size:21

Alignment explanation


    Indices: 217--258  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        207 TGATTCTGCC

                 *          *    
        217 AAGGATCTGAAAGCAAGAGAG
          1 AAGGAACTGAAAGCAAAAGAG

                    *            
        238 AAGGAACTTAAAGCAAAAGAG
          1 AAGGAACTGAAAGCAAAAGAG

        259 GCTGAACTGA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.52, C:0.10, G:0.29, T:0.10


Consensus pattern (21 bp):   
AAGGAACTGAAAGCAAAAGAG
Done.