Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23910

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2343
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.31


Found at i:312 original size:18 final size:20

Alignment explanation


    Indices: 289--326  Score: 53
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        279 CGGTTTGTGT

                                
        289 GAAGCT-TCG-CTTTTTGAA
          1 GAAGCTATCGACTTTTTGAA

                    *           
        307 GAAGCTATGGACTTTTTGAA
          1 GAAGCTATCGACTTTTTGAA

        327 TAGAATGCGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  18    6  0.35
  19    2  0.12
  20    9  0.53

ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37


Consensus pattern (20 bp):   
GAAGCTATCGACTTTTTGAA
Done.