Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11740

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 518

Length: 864
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27


Found at i:148 original size:15 final size:15

Alignment explanation


    Indices: 124--155  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        114 ACGAAGTAGC

                 *         
        124 TCGTCTTTGTCGTTG
          1 TCGTCGTTGTCGTTG

                           
        139 TCGTCGTTGTCGTTG
          1 TCGTCGTTGTCGTTG

              
        154 TC
          1 TC

        156 TTTGTCGCAG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.00, C:0.22, G:0.28, T:0.50


Consensus pattern (15 bp):   
TCGTCGTTGTCGTTG
Done.