Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29157

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 513

Length: 855
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24


Found at i:369 original size:24 final size:24

Alignment explanation


    Indices: 337--443  Score: 196
    Period size: 24  Copynumber: 4.5  Consensus size: 24

        327 TCCTTCGCAT

                                    
        337 GGTGGCAGTCCCCCATCATACGGA
          1 GGTGGCAGTCCCCCATCATACGGA

                                    
        361 GGTGGCAGTCCCCCATCATACGGA
          1 GGTGGCAGTCCCCCATCATACGGA

                                *   
        385 GGTGGCAGTCCCCCATCATATGGA
          1 GGTGGCAGTCCCCCATCATACGGA

                                *   
        409 GGTGGCAGTCCCCCATCATATGGA
          1 GGTGGCAGTCCCCCATCATACGGA

                       
        433 GGTGGCAGTCC
          1 GGTGGCAGTCC

        444 AACTACTCCT


Statistics
Matches: 82,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  24   82  1.00

ACGTcount: A:0.20, C:0.31, G:0.31, T:0.19


Consensus pattern (24 bp):   
GGTGGCAGTCCCCCATCATACGGA

Done.