Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_03612

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 208

Length: 348
ACGTcount: A:0.19, C:0.17, G:0.37, T:0.27


Found at i:196 original size:6 final size:6

Alignment explanation


    Indices: 164--214  Score: 50
    Period size: 6  Copynumber: 8.7  Consensus size: 6

        154 AGGGGTTACG

                 *          *       *        *                   * 
        164 GGTTCG GGTT-T GGGTCT GGTACT GGTTCA GGTTCT GGTTCT GGTTAT
          1 GGTTCT GGTTCT GGTTCT GGTTCT GGTTCT GGTTCT GGTTCT GGTTCT

                
        211 GGTT
          1 GGTT

        215 ATGGGAGTGG


Statistics
Matches: 36,  Mismatches: 8, Indels: 2
        0.78            0.17        0.04

Matches are distributed among these distances:
   5    3  0.08
   6   33  0.92

ACGTcount: A:0.06, C:0.12, G:0.39, T:0.43


Consensus pattern (6 bp):   
GGTTCT

Done.