Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28918

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 615

Length: 1026
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27


Found at i:64 original size:21 final size:21

Alignment explanation


    Indices: 38--78  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

         28 ACTTCATTTT

                                 
         38 TCACCTCAGAGATGCCAGATC
          1 TCACCTCAGAGATGCCAGATC

                  *      *      
         59 TCACCTTAGAGATTCCAGAT
          1 TCACCTCAGAGATGCCAGAT

         79 TTGTCCCAAC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.29, C:0.29, G:0.17, T:0.24


Consensus pattern (21 bp):   
TCACCTCAGAGATGCCAGATC
Done.