Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23741

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 363

Length: 606
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31


Found at i:138 original size:13 final size:14

Alignment explanation


    Indices: 112--141  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        102 TCTTAAAAGG

                          
        112 TTTTGTTTCTTCTT
          1 TTTTGTTTCTTCTT

                          
        126 TTTTGTTTC-TCTT
          1 TTTTGTTTCTTCTT

               
        139 TTT
          1 TTT

        142 ATTAGTTCTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    7  0.44
  14    9  0.56

ACGTcount: A:0.00, C:0.13, G:0.07, T:0.80


Consensus pattern (14 bp):   
TTTTGTTTCTTCTT
Done.