Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33552

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 408

Length: 681
ACGTcount: A:0.30, C:0.19, G:0.31, T:0.20


Found at i:156 original size:3 final size:3

Alignment explanation


    Indices: 148--182  Score: 70
    Period size: 3  Copynumber: 11.7  Consensus size: 3

        138 AGAAGATGAC

                                                          
        148 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA
          1 GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GA

        183 TGACGATGAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   32  1.00

ACGTcount: A:0.34, C:0.00, G:0.66, T:0.00


Consensus pattern (3 bp):   
GAG

Done.