Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14791

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1905
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28


Found at i:1813 original size:63 final size:63

Alignment explanation


    Indices: 1624--1816  Score: 210
    Period size: 63  Copynumber: 3.1  Consensus size: 63

       1614 ATACAAGACA

                            *    *         *        *               * *     
       1624 GAAGAACCTGATCATAGTGAACCCAAAGCTATGGATTTGACTACC-GAACAGCTTCCCATGGAG
          1 GAAGAACCTGATCATACTGAAGCCAAAGCTAAGGATTTGAGTACCAG-ACAGCTTCTCGTGGAG

                *        *              * *                        * * *    
       1687 GAAGTACCTGATCCTACTGAAGCCAAAGGTGAGGATTTGAGTACCAGA-ATGCTTGTTGCGGAG
          1 GAAGAACCTGATCATACTGAAGCCAAAGCTAAGGATTTGAGTACCAGACA-GCTTCTCGTGGAG

                       *                         *           *             
       1750 GAAGAACCTGAGCATACTGAAGCCAAAGCTAAGGATTCGAGTACCAGACCGCTTCTCGTGGAG
          1 GAAGAACCTGATCATACTGAAGCCAAAGCTAAGGATTTGAGTACCAGACAGCTTCTCGTGGAG

                
       1813 GAAG
          1 GAAG

       1817 GAAGCACCGT


Statistics
Matches: 104,  Mismatches: 23, Indels: 6
        0.78            0.17        0.05

Matches are distributed among these distances:
  62    1  0.01
  63  102  0.98
  64    1  0.01

ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20


Consensus pattern (63 bp):   
GAAGAACCTGATCATACTGAAGCCAAAGCTAAGGATTTGAGTACCAGACAGCTTCTCGTGGAG
Done.