Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07957

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 433

Length: 723
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21


Found at i:196 original size:21 final size:21

Alignment explanation


    Indices: 172--233  Score: 97
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        162 CTTGTGGAAT

                *                
        172 GAGGCAGAGGAAACTGAGGAG
          1 GAGGTAGAGGAAACTGAGGAG

                                 
        193 GAGGTAGAGGAAACTGAGGAG
          1 GAGGTAGAGGAAACTGAGGAG

             *           *      
        214 GTGGTAGAGGAAATTGAGGA
          1 GAGGTAGAGGAAACTGAGGA

        234 TACACTTCCA


Statistics
Matches: 38,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  21   38  1.00

ACGTcount: A:0.37, C:0.05, G:0.47, T:0.11


Consensus pattern (21 bp):   
GAGGTAGAGGAAACTGAGGAG
Done.