Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13795

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1323
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33


Found at i:502 original size:12 final size:12

Alignment explanation


    Indices: 480--513  Score: 50
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        470 CTCCTGCTTA

                  *     
        480 TGTTATACTCTT
          1 TGTTATGCTCTT

                *       
        492 TGTTGTGCTCTT
          1 TGTTATGCTCTT

                      
        504 TGTTATGCTC
          1 TGTTATGCTC

        514 CCATTGGTCT


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.09, C:0.18, G:0.18, T:0.56


Consensus pattern (12 bp):   
TGTTATGCTCTT
Done.