Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08231

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 833

Length: 1389
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28


Found at i:221 original size:15 final size:15

Alignment explanation


    Indices: 201--231  Score: 62
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        191 TATTTGGACG

                           
        201 TAGTGGCACTACCAC
          1 TAGTGGCACTACCAC

                           
        216 TAGTGGCACTACCAC
          1 TAGTGGCACTACCAC

             
        231 T
          1 T

        232 TCATCATCAT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23


Consensus pattern (15 bp):   
TAGTGGCACTACCAC
Done.