Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13844

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2442
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26


Found at i:1421 original size:27 final size:27

Alignment explanation


    Indices: 1391--1446  Score: 76
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       1381 AGTTCGAGAG

                               *   *   
       1391 CAATGAAGCGTCAACGAAGTGGACCAT
          1 CAATGAAGCGTCAACGAAGCGGAACAT

                  **                   
       1418 CAATGATTCGTCAACGAAGCGGAACAT
          1 CAATGAAGCGTCAACGAAGCGGAACAT

              
       1445 CA
          1 CA

       1447 TCGAAACACG


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  27   25  1.00

ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16


Consensus pattern (27 bp):   
CAATGAAGCGTCAACGAAGCGGAACAT
Done.