Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13519

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 726

Length: 1211
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25


Found at i:723 original size:6 final size:6

Alignment explanation


    Indices: 708--758  Score: 84
    Period size: 6  Copynumber: 8.5  Consensus size: 6

        698 GGTTCAACAA

                        *      *                                   
        708 CAGCAC CAGCAA CAGCAA CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC
          1 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC

               
        756 CAG
          1 CAG

        759 ATTCAGACTA


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   43  1.00

ACGTcount: A:0.37, C:0.45, G:0.18, T:0.00


Consensus pattern (6 bp):   
CAGCAC

Done.