Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19426

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 261

Length: 435
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30


Found at i:284 original size:18 final size:18

Alignment explanation


    Indices: 253--287  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        243 GCCATACCAG

                    *         
        253 CCTCAAATGCATCCTCCT
          1 CCTCAAATACATCCTCCT

                     *       
        271 CCTCAAATATATCCTCC
          1 CCTCAAATACATCCTCC

        288 ACATCAATTA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.26, C:0.43, G:0.03, T:0.29


Consensus pattern (18 bp):   
CCTCAAATACATCCTCCT
Done.