Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_29348

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 448

Length: 747
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.23


Found at i:132 original size:42 final size:42

Alignment explanation


    Indices: 86--165  Score: 133
    Period size: 42  Copynumber: 1.9  Consensus size: 42

         76 AATCCAAGCA

                                                      
         86 CTGATTACAAGCCAAAGCCACAAGGAGAAGCAAAACCAATCC
          1 CTGATTACAAGCCAAAGCCACAAGGAGAAGCAAAACCAATCC

                                *    *    *       
        128 CTGATTACAAGCCAAAGCCAGAAGGTGAAGTAAAACCA
          1 CTGATTACAAGCCAAAGCCACAAGGAGAAGCAAAACCA

        166 GTGTATGGTT


Statistics
Matches: 35,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  42   35  1.00

ACGTcount: A:0.45, C:0.25, G:0.19, T:0.11


Consensus pattern (42 bp):   
CTGATTACAAGCCAAAGCCACAAGGAGAAGCAAAACCAATCC
Done.