Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19058

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1976
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30


Found at i:1180 original size:18 final size:18

Alignment explanation


    Indices: 1144--1181  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1134 TTTTTCTGCT

                          *   
       1144 TCCCCTTCCCCATCCCCA
          1 TCCCCTTCCCCATCACCA

                       *      
       1162 TCCCCTTCCCCCTCACCA
          1 TCCCCTTCCCCATCACCA

              
       1180 TC
          1 TC

       1182 ACCGCCCATC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.11, C:0.66, G:0.00, T:0.24


Consensus pattern (18 bp):   
TCCCCTTCCCCATCACCA
Done.