Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15829

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2033
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.26


Found at i:1973 original size:24 final size:24

Alignment explanation


    Indices: 1946--1991  Score: 74
    Period size: 24  Copynumber: 1.9  Consensus size: 24

       1936 TGGCTGGTGG

                  *                 
       1946 TTCTGGTGGTGCCCAAGGTGGTTC
          1 TTCTGGAGGTGCCCAAGGTGGTTC

                        *         
       1970 TTCTGGAGGTGCTCAAGGTGGT
          1 TTCTGGAGGTGCCCAAGGTGGT

       1992 GACCAGGCCC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  24   20  1.00

ACGTcount: A:0.11, C:0.17, G:0.39, T:0.33


Consensus pattern (24 bp):   
TTCTGGAGGTGCCCAAGGTGGTTC
Done.