Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Cotton_A_27113
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 270
Length: 450
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Found at i:356 original size:207 final size:207
Alignment explanation
Indices: 1--413 Score: 799
Period size: 207 Copynumber: 2.0 Consensus size: 207
1 ATGGCTGACCAGAAAGACAACAAGGACATCAAGGACTCACCTGGTCCTATCCCTGAAGGTTGGGT
1 ATGGCTGACCAGAAAGACAACAAGGACATCAAGGACTCACCTGGTCCTATCCCTGAAGGTTGGGT
*
66 TTCGCATACCAAGTTCAAAAATGGTATTGAAGTCAAGACCTACTTATGTCCAGTCACTGAGCAAG
66 TTCGCATACCAAGTTCAAAAATGGTATTGAAGTCAAGACCTACTTATGTCCAGCCACTGAGCAAG
131 AATTCTACACTTATGAAGATCTTATGAGATACGTGAGGTATGCCAAAGCTGCCAAGCTTTCCATC
131 AATTCTACACTTATGAAGATCTTATGAGATACGTGAGGTATGCCAAAGCTGCCAAGCTTTCCATC
*
196 TATACTCCTGAA
196 TACACTCCTGAA
208 ATGGCTGACCAGAAAGACAACAAGGACATCAAGGACTCACCTGGTCCTATCCCTGAAGGTTGGGT
1 ATGGCTGACCAGAAAGACAACAAGGACATCAAGGACTCACCTGGTCCTATCCCTGAAGGTTGGGT
273 TTCGCATACCAAGTTCAAAAATGGTATTGAAGTCAAGACCTACTTATGTCCAGCCACTGAGCAAG
66 TTCGCATACCAAGTTCAAAAATGGTATTGAAGTCAAGACCTACTTATGTCCAGCCACTGAGCAAG
338 AATTCTACACTTATGAAGATCTTATGAGATACGTGAGGTATGCCAAAGCTGCCAAGCTTTCCATC
131 AATTCTACACTTATGAAGATCTTATGAGATACGTGAGGTATGCCAAAGCTGCCAAGCTTTCCATC
*
403 TACAGTCCTGA
196 TACACTCCTGA
414 GTTTGAGGAA
Statistics
Matches: 203, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
207 203 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (207 bp):
ATGGCTGACCAGAAAGACAACAAGGACATCAAGGACTCACCTGGTCCTATCCCTGAAGGTTGGGT
TTCGCATACCAAGTTCAAAAATGGTATTGAAGTCAAGACCTACTTATGTCCAGCCACTGAGCAAG
AATTCTACACTTATGAAGATCTTATGAGATACGTGAGGTATGCCAAAGCTGCCAAGCTTTCCATC
TACACTCCTGAA
Done.